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Prüfer, K. et al. A high-coverage Neanderthal genome from the Vindija cave in Croatia. Science 358, 655-658 (2017).
Fu, Q. et al. Genome sequence of a 45,000 year old modern human from western Siberia. Nature 514, 445–449 (2014).
Browning, S. R., Browning, B. L., Zhou, Y., Tucci, S. and Akey, J. M. Analysis of human sequence data reveals two pulses of Denisovan archaic mixture. Cell 173, 53-61 (2018).
Wall, J. D. et al. Higher levels of Neanderthal descent in East Asians than in Europeans. Genetics 194, 199-209 (2013).
Kim, B. Y. and Lohmueller, K. E. Population selection and reduced size cannot explain greater amounts of Neanderthal ancestry in East Asia than in European human populations. A.M. J. Hum. Genet. 96, 454-461 (2015).
Vernot, B. and Akey, J. M. Complex history of mixing between modern humans and Neanderthals. A.M. J. Hum. Genet. 96448-453 (2015).
Villanea, F. A. and Schraiber, J. G. Multiple crossbreeding episodes between Neanderthals and modern humans. Nat. Ecol. Evol. 3, 39–44 (2019).
Dannemann, M. and Kelso, J. The contribution of Neanderthals to phenotypic variation in modern humans. A.M. J. Hum. Genet. 101, 578–589 (2017).
Gittelman, R. M. et al. The mixture of archaic hominids facilitated adaptation to environments outside of Africa. Curr. Biol. 26, 3375–3382 (2016).
Gregory, M. D. et al. Neanderthal-derived genetic variation shapes the modern human skull and brain. Sci. Reps. 7 76308 (2017).
McCoy, R. C., Wakefield, J. and Akey, J. M. Impacts of Neanderthal-introgressed sequences in the human gene expression landscape. Cell 168, 916–927 (2017).
Dannemann, M., Prüfer, K. and Kelso, J. Functional implications of Neanderthal introgression in modern humans. Biol Genome. 18 years61 (2017).
Simonti, C. N. et al. The phenotypic legacy of the mix between modern humans and Neanderthals. Science 351, 737–741 (2016).
Vernot, B. and Akey, J. M. Reviving surviving Neanderthal lineages of modern human genomes. Science 343, 1017-1021 (2014).
Sankararaman, S. et al. The genomic landscape of Neanderthal ancestry in modern humans. Nature 507, 354–357 (2014).
Steinrücken, M., Spence, J. P., Kamm, J. A., Wieczorek, E. & Song, Y. S. Model-based detection and analysis of introgressed Neanderthal ancestry in modern humans. Mol. Ecol. 27, 3873–3888 (2018).
Meyer, M. et al. A high-coverage genome sequence from an archaic Denisovan individual. Science 338, 222–226 (2012).
Prüfer, K. et al. The complete genome sequence of a Neanderthal from the Altai Mountains. Nature 505, 43-49 (2014).
Slon, V. et al. The genome of the offspring of a Neanderthal mother and a Denisovan father. Nature 561113-116 (2018).
Skov, L. et al. Detection of archaic introgression using an unmixed external group. PLoS Genet. 14, e1007641 (2018).
Kong, A. et al. Detection of sharing by descent, long-range phases and imputation of haplotypes. Nat. Gineta. 40, 1068-1075 (2008).
The 1000 Genomes Project Consortium. A global reference for human genetic variation. Nature 526, 68-74 (2015).
Sankararaman, S., Mallick, S., Patterson, N. and Reich, D. The combined landscape of Denisovan and Neanderthal ancestry in today’s humans. Curr. Biol. 26, 1241-1247 (2016).
Vernot, B. et al. Excavating the Neanderthal and Denisovan DNA from the genomes of Melanesian individuals. Science 352, 235–239 (2016).
Schumer, M. et al. Natural selection interacts with recombination to shape the evolution of hybrid genomes. Science 360, 656–660 (2018).
Harris, K. and Pritchard, J. K. Rapid evolution of the human mutation spectrum. elife 6 6, e24284 (2017).
Moorjani, P., Amorim, C. E. G., Arndt, P. F. and Przeworski, M. Variation in the molecular clock of primates. Proc. Natl Acad. Sci. United States 113, 10607-10612 (2016).
Jónsson, H. et al. Influence of parents on de novo human germline mutations in 1,548 Iceland trios Nature 549, 519-522 (2017).
Harris, K. and Nielsen, R. The genetic cost of Neanderthal introgression. Genetics 203, 881–891 (2016).
Juric, I., Aeschbacher, S. and Coop, G. The force of selection against Neanderthal introgression. PLoS Genet. 12, e1006340 (2016).
Castellano, S. et al. Coding variation patterns in the complete exomes of three Neanderthals. Proc. Natl Acad. Sci. United States 1116666-6671 (2014).
McLaren, W. et al. The variant effect predictor Ensembl. Biol Genome. 17122 (2016).
Sveinbjornsson, G. et al. Weighting sequence variants based on their annotation increase the power of genome-wide association studies. Nat. Gineta. 48, 314–317 (2016).
Kote-Jarai, Z. et al. Identification of a new variant of susceptibility to prostate cancer in the KLK3 gene transcription Hum. Genet. 129 129687-694 (2011).
Hajdinjak, M. et al. Reconstructing the genetic history of late Neanderthals. Nature 555, 652-656 (2018).
Besenbacher, S., Hvilsom, C., Marques-Bonet, T., Mailund, T. and Schierup, M. H. Direct estimation of mutations in great apes reconciles phylogenetic dating. Nat. Ecol. Evol. 3, 286–292 (2019).
